PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 164aa    MW: 18497.3 Da    PI: 5.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052850123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C+ C++ F++   L  H++ H
  Tp57577_TGAC_v2_mRNA29726 28 YDCTFCKRGFTNARALGGHMNIH 50
                               88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.46E-72555No hitNo description
Gene3DG3DSA:3.30.160.608.0E-52554IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5932855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MELEMVTSSE ESDEQVVQDE SIETKRSYDC TFCKRGFTNA RALGGHMNIH RKERTNYKTK  60
QGTQNSSPFV PIVSSQPSTY YCILESPRNY DMYLQPSKAN PSPPSFFQYD FLNTNSQSMM  120
GTNLSLQIGS SHEGNDHVWR GIGKDGEGVD LELRLGHDSY SNY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467115.12e-99transcriptional regulator superman protein
TrEMBLA0A072VHQ42e-99A0A072VHQ4_MEDTR; Transcriptional regulator superman protein
STRINGGLYMA20G34840.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein